SNP Profiles of PA56 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
1._RUQ_32	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
2._RUQ_32	_	GG	CG	CT	_	_	_	TT	_	_	_	_	CC	AG
3._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
4._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
5._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
6._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
7._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
8._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
9._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
10._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
11._RUQ_32	_	_	CG	_	_	_	_	TT	_	CC	_	GG	_	AG
12._NA	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
13._PA_56_[PER]	CC	GG	CG	CT	TT	AC	CC	TT	CC	CC	AA	GG	CC	AG
14._-	GG	GG	CG	AG	AA	AC	GG	AA	_	_	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
1._RUQ_32	CT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CG	GT	CT	AC
2._RUQ_32	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GT	CT	AC
3._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
4._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
5._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
6._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
7._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
8._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
9._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
10._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
11._RUQ_32	_	_	_	_	_	GG	GG	AA	_	CC	CG	_	_	AA
12._NA	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
13._PA_56_[PER]	CT	AA	GG	CT	CC	GG	GG	GG	TT	CC	CG	GT	CT	AC
14._-	AG	AA	GG	AG	GG	CC	CC	_	AA	CC	CG	AC	_	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AC	CC	GG	CC	AA	GG	X_X	X_X
1._RUQ_32	AA	GG	AA	CC	AG	CC	AC	CC	GG	CC	AA	GG	X_X	X_X
2._RUQ_32	AA	_	AA	CC	AG	CC	AC	CC	GG	CC	_	_	X_X	X_X
3._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
4._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
5._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
6._NA	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
7._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
8._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
9._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
10._PA_56_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
11._RUQ_32	_	_	_	_	AG	_	_	_	_	CC	_	_	X_X	X_X
12._NA	AA	GG	_	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
13._PA_56_[PER]	AA	GG	_	CC	AG	CC	AA	CC	GG	CC	AA	GG	X_X	X_X
14._-	_	GG	AA	GG	AG	GG	AC	GG	CC	CC	AA	GG	X_X	X_X

Input profile: PA_56_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 238

Dapeng Zhang, 2016

1._PA_56_[PER] RUQ_32

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_56_[PER] RUQ_32

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: Dead

4._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: Dead

5._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._PA_56_[PER] NA

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 6

Dapeng Zhang, 2016

8._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 4

Dapeng Zhang, 2016

9._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 3

Dapeng Zhang, 2016

10._PA_56_[PER]

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 2

Dapeng Zhang, 2016

11._PA_56_[PER] RUQ_32

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._PA_56_[PER] NA

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._PA_56_[PER]

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8176 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._PA_56_[PER] -

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 76, Tree: 1

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25